Alphabetically the SRA Toolkit contains:
  • abi-dump
  • abi-load
  • align-info
  • args-test
  • bam-load
  • cg-load
  • crc32sum
  • csra-trim
  • deseq
  • double-VCursorCommit-test
  • fastq-dump
  • fastq-load
  • helicos-load
  • illumina-dump
  • illumina-load
  • kar
  • kdb2vdb
  • kdbmeta
  • kqsh
  • ktartest
  • md5appendtest
  • md5cp
  • nenctool
  • nencvalid
  • pacbio-correct
  • pacbio-loadxml
  • pmem-test
  • qfiletest
  • qual-recalib-stat
  • rcexplain
  • read-filter-redact
  • refseq-load
  • rowwritetest
  • sam-dump
  • schema-replace
  • sff-dump
  • sff-load
  • sortreadtest
  • sra-dbcc
  • sra-dump
  • sra-kar
  • sra-pileup
  • sra-stat
  • srapath
  • srf-load
  • test-btree
  • test-buffile
  • test-error
  • test-float
  • test-kfg
  • test-modes
  • test-pagefile
  • test-read-write-cursor
  • test-static
  • test-sysfs
  • test-xfs
  • test-xfs2
  • test_printf
  • testld
  • txt2kdb
  • vdb-config
  • vdb-copy
  • vdb-dump
  • vdb-lock
  • vdb-passwd
  • vdb-unlock
  • Tasks (Categorize tools by task) Converting to other formats Validating