Alphabetically the SRA Toolkit contains:
abi-dump
abi-load
align-info
args-test
bam-load
cg-load
crc32sum
csra-trim
deseq
double-VCursorCommit-test
fastq-dump
fastq-load
helicos-load
illumina-dump
illumina-load
kar
kdb2vdb
kdbmeta
kqsh
ktartest
md5appendtest
md5cp
nenctool
nencvalid
pacbio-correct
pacbio-loadxml
pmem-test
qfiletest
qual-recalib-stat
rcexplain
read-filter-redact
refseq-load
rowwritetest
sam-dump
schema-replace
sff-dump
sff-load
sortreadtest
sra-dbcc
sra-dump
sra-kar
sra-pileup
sra-stat
srapath
srf-load
test-btree
test-buffile
test-error
test-float
test-kfg
test-modes
test-pagefile
test-read-write-cursor
test-static
test-sysfs
test-xfs
test-xfs2
test_printf
testld
txt2kdb
vdb-config
vdb-copy
vdb-dump
vdb-lock
vdb-passwd
vdb-unlock
Tasks
(Categorize tools by task)
Converting to other formats
Validating